miRBase entry: ppt-MIR319b

Stem-loop ppt-MIR319b


Accession
MI0003497
Description
Physcomitrella patens ppt-MIR319b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
3 open access papers mention ppt-MIR319b
(34 sentences)

Sequence

gagcucuuuucaguccaguagcagcuaaugucgaagguuguaccgcugccgacucaaacuuccggcuuccauaucacgacgcgugauauggaauccgaaggucugauccgggagcugaucgaucuccagguuagcaucuCUUGGACUGAAGGGAGCUCCu
((((((((((((((((((.((..((((((.(.((.(((((..(.(((.(((..(((.((((.(((.((((((((((((...)))))))))))).))).)))).)))..))).))).)..))))))).).))))))..)).))))))))))))))))))..

Structure
--                  u  ca      g c  a     ua c   g   ac   a    c   c            a 
  gagcucuuuucaguccag ag  gcuaau u ga gguug  c gcu ccg  uca acuu cgg uuccauaucacg  
  |||||||||||||||||| ||  |||||| | || |||||  | ||| |||  ||| |||| ||| |||||||||||| c
  CUCGAGGGAAGUCAGGUU uc  cgauug a cu cuagc  g cga ggc  agu ugga gcc aagguauagugc  
uC                  C  ua      g c  -     ua u   g   cu   c    a   u            g 


Annotation confidence Not enough data
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Genome context
Chr19: 4255957-4256116 [-]

Database links

Mature ppt-miR319b

Accession MIMAT0003134
Description Physcomitrella patens ppt-miR319b mature miRNA
Sequence 140 - CUUGGACUGAAGGGAGCUCC - 159
Evidence experimental
cloned [1], 454 [2]

References

  1. PubMed ID: 16146523
    Cloning and characterization of micro-RNAs from moss
    "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
    "Plant J (2005) 43:837-848

  2. PubMed ID: 17601824
    Common functions for diverse small RNAs of land plants
    "Axtell MJ, Snyder JA, Bartel DP"
    "Plant Cell (2007) 19:1750-1769