Stem-loop sequence rno-mir-370

Accession

MI0003486 (change log)

Description

Rattus norvegicus miR-370 stem-loop

Gene family

MIPF0000167; mir-370

Literature search

14 open access papers mention rno-mir-370
(28 sentences)

Stem-loop

          g         ca gu   u    u   a  g 
5' agacaga agaccaggu  c  cuc gcag uac ca c
   ||||||| |||||||||  |  ||| |||| ||| || u
3' ucugucu uuuggucca  g  ggg cguc gug gu c
          g         ag ug   u    c   a  a 

Deep sequencing

8735 reads, 3.17 reads per million, 252 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 133739916-133739994 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-370

• rno-mir-341: chr6: 133733240-133733335 [+]
• rno-mir-1188: chr6: 133733578-133733659 [+]
• rno-mir-370: chr6: 133739916-133739994 [+]

Database links

• EntrezGene:Mir370
• miRBase Tracker:MI0003486

Mature sequence rno-miR-370-5p

• Accession: MIMAT0017202
• Previous IDs: rno-miR-370*
• Sequence: 13 - caggucacgucucugcaguuacac - 36
• Deep sequencing: 2637 reads, 154 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-370-5p
  • miRDB:rno-miR-370-5p

Mature sequence rno-miR-370-3p

• Accession: MIMAT0003122
• Previous IDs: rno-miR-370
• Sequence: 48 - gccugcugggguggaaccuggu - 69
• Deep sequencing: 6091 reads, 240 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-370-3p
  • miRDB:rno-miR-370-3p
  • microrna.org:rno-miR-370-3p

References

1. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).