Stem-loop sequence rno-mir-483

Accession

MI0003485 (change log)

Description

Rattus norvegicus miR-483 stem-loop

Gene family

MIPF0000180; mir-483

Literature search

12 open access papers mention rno-mir-483
(185 sentences)

Stem-loop

          -          aa   aa   a u   uuu 
5' gaggggg aagacgggag  gag  ggg g ggu   u
   ||||||| ||||||||||  |||  ||| | |||    
3' cucucuu uucugcccuc  cuc  cuc c ccg   g
          g          cc   --   a u   ugg 

Deep sequencing

4901 reads, 0 reads per million, 263 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 215832088-215832160 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000050760 ; Igf2-202; intron 2

  ENSRNOT00000073850 ; Igf2-201; intron 2

Database links

• EntrezGene:Mir483
• miRBase Tracker:MI0003485

Mature sequence rno-miR-483-5p

• Accession: MIMAT0017201
• Previous IDs: rno-miR-483*
• Sequence: 8 - aagacgggagaagagaagggag - 29
• Deep sequencing: 1140 reads, 170 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-483-5p
  • miRDB:rno-miR-483-5p

Mature sequence rno-miR-483-3p

• Accession: MIMAT0003121
• Previous IDs: rno-miR-483
• Sequence: 46 - cacuccuccccucccgucuugu - 67
• Deep sequencing: 3760 reads, 235 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-483-3p
  • miRDB:rno-miR-483-3p
  • microrna.org:rno-miR-483-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).