miRBase entry: rno-mir-215

Stem-loop rno-mir-215


Accession
MI0003482
Description
Rattus norvegicus rno-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
10 open access papers mention rno-mir-215
(29 sentences)

Sequence

32634879 reads, 37714 reads per million, 490 experiments
gguguacaggacaAUGACCUAUGAUUUGACAGACAguguggcucnnugcgugugucugucauucuguaggccaauauucuguaugucucuccuccuuacaa
(((((((((((...((.(((((((..(((((((((.....((.....))...))))))))).)).))))).))...)))))))))))..............

Structure
--------------           caA  A     -  UU         gugug  u 
              gguguacagga   UG CCUAU GA  UGACAGACA     gc c
              |||||||||||   || ||||| ||  |||||||||     || n
              cuguaugucuu   ac ggaug cu  acugucugu     cg n
aacauuccuccucu           aua  c     u  -u         --gug  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rno-miR-215

Accession MIMAT0003118
Description Rattus norvegicus rno-miR-215 mature miRNA
Sequence 14 - AUGACCUAUGAUUUGACAGACA - 35
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267