Stem-loop sequence rno-mir-501

AccessionMI0003480 (change log)
DescriptionRattus norvegicus miR-501 stem-loop
Gene family MIPF0000139; mir-500
Literature search

4 open access papers mention rno-mir-501
(4 sentences)

Stem-loop 
      cg  c       uc     u   u     aaaa   uau 
5' gcu  uc ucucuaa  cuuug ccc gggug    ugc   u
   |||  || |||||||  ||||| ||| |||||    |||   u
3' cga  gg agggguu  ggaac ggg cccac    acg   g
      au  a       ua     -   -     -gua   uau
Get sequence
Deep sequencing
15086 reads, 0.429 reads per million, 466 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chrX: 16117874-16117957 [+]
antisense
ENSRNOT00000054671 ; Mir3560-201; exon 1
Clustered miRNAs
< 10kb from rno-mir-501
rno-mir-532chrX: 16109870-16109948 [+]
rno-mir-188chrX: 16110270-16110349 [+]
rno-mir-362chrX: 16117170-16117234 [+]
rno-mir-3560chrX: 16117863-16117974 [-]
rno-mir-501chrX: 16117874-16117957 [+]
rno-mir-500chrX: 16121332-16121411 [+]
Database links

Mature sequence rno-miR-501-5p

Accession MIMAT0003116
Previous IDsrno-miR-501
Sequence

14 -  

aauccuuugucccuggguga

 - 33

Get sequence
Deep sequencing453 reads, 206 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-501-3p

Accession MIMAT0017198
Previous IDsrno-miR-501*
Sequence

51 -  

aaugcacccgggcaaggauuugg

 - 73

Get sequence
Deep sequencing14633 reads, 470 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).