miRBase entry: rno-mir-207

Stem-loop rno-mir-207


Accession
MI0003479
Description
Rattus norvegicus rno-mir-207 precursor miRNA
Gene family
MIPF0000241; mir-207

Literature search
7 open access papers mention rno-mir-207
(15 sentences)

Sequence

15 reads, 3 reads per million, 14 experiments
aggcaggggugaggggcugcgggaggagcggggcggaggcugcggcuugcgCUUCUCCUGGCUCUCCUCCCUUUcuuu
.((.(((((.((((((...(((((((((((((((.(......).)))).)))))))))))...)))))))))))))..

Structure
-a  c     u      cug           -    g ag 
  gg agggg gagggg   cgggaggagcg gggc g  g
  || ||||| ||||||   ||||||||||| |||| |   
  uc UUUCC CUCCUC   GUCCUCUUCgc uucg c  c
uu  -     -      UCG           g    g gu 


Annotation confidence Not enough data
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Genome context
chr5: 57028859-57028936 [+]

Database links

Mature rno-miR-207

Accession MIMAT0003115
Description Rattus norvegicus rno-miR-207 mature miRNA
Sequence 52 - CUUCUCCUGGCUCUCCUCCCUUU - 74
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 16274478
    Identification of clustered microRNAs using an ab initio prediction method
    Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
    BMC Bioinformatics (2005) 6:267