miRBase entry: dre-mir-212

Stem-loop dre-mir-212


Accession
MI0003385
Description
Danio rerio dre-mir-212 precursor miRNA
Gene family
MIPF0000065; mir-132

Literature search
5 open access papers mention dre-mir-212
(57 sentences)

Sequence

250 reads, 30 reads per million, 10 experiments
gucagugcaucaauaccuuggcucuagacugcuuacugcuaaaugugucugaaaguacagUAACAGUCUACAGUCAUGGCUacugacgucuggc
(((((.((.(((.((((.(((((.(((((((.((((((...................))))))))))))).))))).)).)).))).)))))))

Structure
     u  a   a  -  u     c       c      cuaaaugu 
gucag gc uca ua cc uggcu uagacug uuacug        g
||||| || ||| || || ||||| ||||||| ||||||        u
cgguc ug agu aU GG ACUGA AUCUGAC AAUgac        c
     -  c   c  C  U     C       -      augaaagu 


Annotation confidence High
Do you think this miRNA is real?
Comments
This miRNA was predicted by computational methods using conservation between human, mouse and Fugu rubripes sequences [1]. Expression of the excised miR was validated in zebrafish, and the 5' end mapped by PCR. The 3' end was not experimentally determined.

Genome context
chr15: 25897446-25897539 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-212
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-212

Accession MIMAT0003049
Description Danio rerio dre-miR-212 mature miRNA
Sequence 61 - UAACAGUCUACAGUCAUGGCU - 81
Evidence experimental
PCR [1]

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540