miRBase entry: mmu-mir-532

Stem-loop mmu-mir-532


Accession
MI0003206
Symbol
MGI: Mir532
Description
Mus musculus mmu-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
13 open access papers mention mmu-mir-532
(76 sentences)

Sequence

134521 reads, 449 reads per million, 107 experiments
cagauuugcuuuuucucuucCAUGCCUUGAGUGUAGGACCGUugacaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagagcaagccuucuc
.(((...((((.(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).))))))).))))..))).

Structure
c   uuu    u       c  U      A    A   CC  ugaca 
 aga   gcuu uucucuu CA GCCUUG GUGU GGA  GU     u
 |||   |||| ||||||| || |||||| |||| |||  ||     c
 ucu   cgaa gagaggA GU CGGAAC CACA CCU  ca     u
c   -uc    c       C  U      C    C   CC  uuaau 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 7248402-7248497 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mmu-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-532-5p

Accession MIMAT0002889
Description Mus musculus mmu-miR-532-5p mature miRNA
Sequence 21 - CAUGCCUUGAGUGUAGGACCGU - 42
Evidence experimental
PCR [1], miRAP-cloned [2], cloned [3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-532-3p

Accession MIMAT0004781
Description Mus musculus mmu-miR-532-3p mature miRNA
Sequence 58 - CCUCCCACACCCAAGGCUUGCA - 79
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PCR-based expression analysis and identification of microRNAs
    "Lu DP, Read RL, Humphreys DT, Battah FM, Martin DIK, Rasko JEJ"
    "RNAi and Gene Silencing (2005) 1:44-49

  5. PubMed ID: 16973894
    Mouse microRNA profiles determined with a new and sensitive cloning method
    "Takada S, Berezikov E, Yamashita Y, Lagos-Quintana M, Kloosterman WP, Enomoto M, Hatanaka H, Fujiwara S, Watanabe H, Soda M, Choi YL, Plasterk RH, Cuppen E, Mano H"
    "Nucleic Acids Res (2006) 34:e115