Stem-loop sequence hsa-mir-510

Accession

MI0003197 (change log)

Symbol

HGNC:MIR510

Description

Homo sapiens miR-510 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

15 open access papers mention hsa-mir-510
(142 sentences)

Stem-loop

      g  uc      -a    a  gg         g a 
5' gug ug  cuacuc  ggag gu  caaucacau u a
   ||| ||  ||||||  |||| ||  ||||||||| |  
3' cac au  ggugag  ucuc ca  guuagugug a u
      a  ga      aa    -  aa         g u 

Deep sequencing

1759 reads, 20.4 reads per million, 49 experiments

Confidence

Annotation confidence: high

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Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147272335-147272408 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-510

• hsa-mir-514a-2: chrX: 147281943-147282030 [-]
• hsa-mir-514a-1: chrX: 147279247-147279344 [-]
• hsa-mir-510: chrX: 147272335-147272408 [-]

Database links

• EntrezGene:MIR510
• HGNC:MIR510
• RNAcentral:URS000075EFA3_9606
• miRBase Tracker:MI0003197

Mature sequence hsa-miR-510-5p

• Accession: MIMAT0002882
• Sequence: 10 - uacucaggagaguggcaaucac - 31
• Deep sequencing: 1275 reads, 44 experiments
• Evidence: experimental; array-cloned [1], cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS00001CC4BD_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-510-5p
  • miRDB:hsa-miR-510-5p
  • microrna.org:hsa-miR-510-5p

Mature sequence hsa-miR-510-3p

• Accession: MIMAT0026613
• Sequence: 47 - auugaaaccucuaagagugga - 67
• Deep sequencing: 481 reads, 17 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000075B179_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-510-3p
  • miRDB:hsa-miR-510-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).