Stem-loop sequence hsa-mir-520f

Accession

MI0003146 (change log)

Symbol

HGNC:MIR520F

Description

Homo sapiens miR-520f stem-loop

Gene family

MIPF0000020; mir-515

Literature search

36 open access papers mention hsa-mir-520f
(188 sentences)

Stem-loop

           u                        u  gugg  a 
5' ucucaggc gugacccucuaaagggaagcgcuu cu    uc g
   |||||||| |||||||||||||||||||||||| ||    || a
3' aggguuug cauugggagauuuuccuucgugaa ga    ag a
           c                        c  --aa  a 

Deep sequencing

651 reads, 4.69 reads per million, 64 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53682159-53682245 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000464179 ; ZNF665-002; intron 1

  OTTHUMT00000464180 ; ZNF665-001; intron 2

  ENST00000600412 ; ZNF665-002; intron 1

  ENST00000396424 ; ZNF665-001; intron 2

Clustered miRNAs

< 10kb from hsa-mir-520f

• hsa-mir-498: chr19: 53674197-53674320 [+]
• hsa-mir-520e: chr19: 53675711-53675797 [+]
• hsa-mir-515-1: chr19: 53679003-53679085 [+]
• hsa-mir-519e: chr19: 53679940-53680023 [+]
• hsa-mir-520f: chr19: 53682159-53682245 [+]
• hsa-mir-515-2: chr19: 53685009-53685091 [+]
• hsa-mir-519c: chr19: 53686469-53686555 [+]
• hsa-mir-1283-1: chr19: 53688481-53688567 [+]
• hsa-mir-520a: chr19: 53690881-53690965 [+]

Database links

• EntrezGene:MIR520F
• HGNC:MIR520F
• RNAcentral:URS000072A937_9606
• miRBase Tracker:MI0003146

Mature sequence hsa-miR-520f-5p

• Accession: MIMAT0026609
• Sequence: 15 - ccucuaaagggaagcgcuuucu - 36
• Deep sequencing: 150 reads, 24 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-520f-5p
  • miRDB:hsa-miR-520f-5p

Mature sequence hsa-miR-520f-3p

• Accession: MIMAT0002830
• Sequence: 55 - aagugcuuccuuuuagaggguu - 76
• Deep sequencing: 490 reads, 48 experiments
• Evidence: experimental; array-cloned [1], Illumina [2]
• Database links:
  • RNAcentral:URS000000E601_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-520f-3p
  • miRDB:hsa-miR-520f-3p
  • microrna.org:hsa-miR-520f-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).