Stem-loop sequence hsa-mir-512-2

Accession

MI0003141 (change log)

Symbol

HGNC:MIR512-2

Description

Homo sapiens miR-512-2 stem-loop

Gene family

MIPF0000130; mir-506

Literature search

42 open access papers mention hsa-mir-512-2
(249 sentences)

Stem-loop

      a   --       ug   ca      cu   g       ----    g 
5' ggu cuu  cucaguc  ugg  cucagc  uga ggcacuu    ucug u
   ||| |||  |||||||  |||  ||||||  ||| |||||||    ||||  
3' cca gag  gagucag  acc  gagucg  acu ucgugaa    agac g
      c   cg       ua   ug      au   g       agua    c 

Deep sequencing

347 reads, 0 reads per million, 36 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr19: 53669157-53669254 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000464179 ; ZNF665-002; exon 2

  OTTHUMT00000464180 ; ZNF665-001; exon 4

  ENST00000600412 ; ZNF665-002; exon 2

  ENST00000396424 ; ZNF665-001; exon 4

Clustered miRNAs

< 10kb from hsa-mir-512-2

• hsa-mir-512-1: chr19: 53666679-53666762 [+]
• hsa-mir-512-2: chr19: 53669157-53669254 [+]
• hsa-mir-1323: chr19: 53671968-53672040 [+]
• hsa-mir-498: chr19: 53674197-53674320 [+]
• hsa-mir-520e: chr19: 53675711-53675797 [+]
• hsa-mir-515-1: chr19: 53679003-53679085 [+]

Database links

• EntrezGene:MIR512-2
• HGNC:MIR512-2
• RNAcentral:URS000075A8E9_9606
• miRBase Tracker:MI0003141

Mature sequence hsa-miR-512-5p

• Accession: MIMAT0002822
• Sequence: 20 - cacucagccuugagggcacuuuc - 42
• Deep sequencing: 126 reads, 20 experiments
• Evidence: experimental; array-cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-512-5p
  • TargetScanVert:hsa-miR-512-5p
  • miRDB:hsa-miR-512-5p
  • microrna.org:hsa-miR-512-5p

Mature sequence hsa-miR-512-3p

• Accession: MIMAT0002823
• Sequence: 57 - aagugcugucauagcugagguc - 78
• Deep sequencing: 562 reads, 28 experiments
• Evidence: experimental; array-cloned [1], cloned [2]
• Database links:
  • RNAcentral:URS000020F110_9606
• Predicted targets:
  • TargetMiner:hsa-miR-512-3p
  • TargetScanVert:hsa-miR-512-3p
  • miRDB:hsa-miR-512-3p
  • microrna.org:hsa-miR-512-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).