Stem-loop sequence hsa-mir-490

Accession

MI0003125 (change log)

Symbol

HGNC:MIR490

Description

Homo sapiens miR-490 stem-loop

Gene family

MIPF0000229; mir-490

Literature search

34 open access papers mention hsa-mir-490
(136 sentences)

Stem-loop

   u     -cc      g    -   aguucauu        c      --         g   caa   u 
5'  ggagg   uugcug uuug gaa        guucgaca caugga  ucuccaggu ggu   guu a
    |||||   |||||| |||| |||        |||||||| ||||||  ||||||||| |||   |||  
3'  ccuuc   ggcgac gaac cuu        cgaguugu guaccu  ggaggucca cca   uag g
   a     aca      -    a   ------gu        c      ca         a   -cg   a 

Deep sequencing

1419 reads, 13.6 reads per million, 66 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr7: 136903167-136903294 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR490
• HGNC:MIR490
• RNAcentral:URS00006E154A_9606
• miRBase Tracker:MI0003125

Mature sequence hsa-miR-490-5p

• Accession: MIMAT0004764
• Sequence: 39 - ccauggaucuccaggugggu - 58
• Deep sequencing: 422 reads, 32 experiments
• Evidence: experimental; cloned [2-3]
• Database links:
  • RNAcentral:URS00004556E5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-490-5p
  • TargetScanVert:hsa-miR-490-5p
  • miRDB:hsa-miR-490-5p
  • microrna.org:hsa-miR-490-5p

Mature sequence hsa-miR-490-3p

• Accession: MIMAT0002806
• Previous IDs: hsa-miR-490
• Sequence: 76 - caaccuggaggacuccaugcug - 97
• Deep sequencing: 981 reads, 48 experiments
• Evidence: experimental; array-cloned [1]
• Database links:
  • RNAcentral:URS00001496AE_9606
• Predicted targets:
  • TargetMiner:hsa-miR-490-3p
  • TargetScanVert:hsa-miR-490-3p
  • miRDB:hsa-miR-490-3p
  • microrna.org:hsa-miR-490-3p

References

1. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:18230126 "New miRNAs cloned from neuroblastoma" Afanasyeva EA, Hotz-Wagenblatt A, Glatting KH, Westermann F BMC Genomics. 9:52(2008).