miRBase entry: mml-mir-183

Stem-loop mml-mir-183


Accession
MI0003084
Description
Macaca mulatta mml-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
1 open access papers mention mml-mir-183
(3 sentences)

Sequence

38508 reads, 286 reads per million, 9 experiments
ccgcagaacgugacuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaacagucucggucaGUGAAUUACCGAAGGGCCAUAAAcagagcagagacagauccacga
........((((..(((((((((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))))))).....))..)))).

Structure
ccgcagaa    ac  -----         g      A  --    GA        --   ac 
        cgug  uc     cuguucugu UAUGGC CU  GGUA  AUUCACUG  uga  a
        ||||  ||     ||||||||| |||||| ||  ||||  ||||||||  |||   
        gcac  ag     gacgagacA AUACCG GA  CCAU  UAAGUGac  gcu  g
-------a    cu  acaga         A      G  AG    --        ug   cu 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 155860330-155860439 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mml-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-183-5p

Accession MIMAT0002783
Description Macaca mulatta mml-miR-183-5p mature miRNA
Sequence 27 - UAUGGCACUGGUAGAAUUCACUG - 49
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-183-3p

Accession MIMAT0026603
Description Macaca mulatta mml-miR-183-3p mature miRNA
Sequence 66 - GUGAAUUACCGAAGGGCCAUAAA - 88
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45