miRBase entry: mml-mir-23a

Stem-loop mml-mir-23a


Accession
MI0003051
Description
Macaca mulatta mml-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
5 open access papers mention mml-mir-23a
(7 sentences)

Sequence

44908 reads, 310 reads per million, 9 experiments
ggccggcuggGGUUCCUGGGGAUGGGAUUUgcuuccugucacaaAUCACAUUGCCAGGGAUUUCCaaccgacc
((.(((.((((((((((((.((((.((((((..........)))))).)))).))))))).))))).))).))

Structure
  c   c     -       G    G      cuuc 
gg cgg uggGG UUCCUGG GAUG GAUUUg    c
|| ||| ||||| ||||||| |||| ||||||     
cc gcc aCCUU AGGGACC UUAC CUAaac    u
  a   a     U       G    A      acug 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr19: 13839158-13839230 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mml-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-23a-3p

Accession MIMAT0002752
Description Macaca mulatta mml-miR-23a-3p mature miRNA
Sequence 45 - AUCACAUUGCCAGGGAUUUCC - 65
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-23a-5p

Accession MIMAT0026599
Description Macaca mulatta mml-miR-23a-5p mature miRNA
Sequence 11 - GGUUCCUGGGGAUGGGAUUU - 30
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45