Stem-loop sequence mml-mir-23a

AccessionMI0003051 (change log)
DescriptionMacaca mulatta miR-23a stem-loop
Gene family MIPF0000027; mir-23
Literature search

5 open access papers mention mml-mir-23a
(7 sentences)

Stem-loop 
     c   c     -       g    g      cuuc 
5' gg cgg ugggg uuccugg gaug gauuug    c
   || ||| ||||| ||||||| |||| ||||||     
3' cc gcc accuu agggacc uuac cuaaac    u
     a   a     u       g    a      acug
Get sequence
Deep sequencing
154018 reads, 744 reads per million, 9 experiments
Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (Mmul_8.0.1; GCA_000772875.3) Overlapping transcripts
chr19: 13839158-13839230 [-]
antisense
ENSMMUT00000019009 ; IL27RA-201; 3'UTR (exon 10)
Clustered miRNAs
< 10kb from mml-mir-23a
mml-mir-23achr19: 13839158-13839230 [-]
mml-mir-27achr19: 13839013-13839090 [-]
mml-mir-24-2chr19: 13838860-13838932 [-]
Database links

Mature sequence mml-miR-23a-5p

Accession MIMAT0026599
Sequence

11 -  

gguuccuggggaugggauuu

 - 30

Get sequence
Deep sequencing7 reads, 4 experiments
Evidence experimental; Illumina [2]
Predicted targets

Mature sequence mml-miR-23a-3p

Accession MIMAT0002752
Sequence

45 -  

aucacauugccagggauuucc

 - 65

Get sequence
Deep sequencing154010 reads, 9 experiments
Evidence experimental; Illumina [2]
Database links
Predicted targets

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).
2
PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).