miRBase entry: mml-mir-215

Stem-loop mml-mir-215


Accession
MI0003025
Description
Macaca mulatta mml-mir-215 precursor miRNA
Gene family
MIPF0000063; mir-192

Literature search
2 open access papers mention mml-mir-215
(2 sentences)

Sequence

29106 reads, 133 reads per million, 9 experiments
aucauuaagaaaugguauacaggaaaAUGACCUAUGAAUUGACAGACacuauagcugaguuugUCUGUCAUUUCUUUAGGCCAAUAuucuguaugacugugcuacuucaa
.......((..(((((((((((((...((.((((.(((.(((((((((..((......)).))))))))).)))..)))).))...)))))))).))))).)).......

Structure
aucauua  aa     -        aaA  A    -U   U         cu  ag 
       ag  auggu auacagga   UG CCUA  GAA UGACAGACa  au  c
       ||  ||||| ||||||||   || ||||  ||| |||||||||  ||   
       uc  uguca uaugucuu   AC GGAU  CUU ACUGUCUgu  ug  u
aacuuca  -g     g        AUA  C    UU   U         -u  ag 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 146241256-146241365 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-215
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-215-5p

Accession MIMAT0002728
Description Macaca mulatta mml-miR-215-5p mature miRNA
Sequence 27 - AUGACCUAUGAAUUGACAGAC - 47
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-215-3p

Accession MIMAT0026598
Description Macaca mulatta mml-miR-215-3p mature miRNA
Sequence 64 - UCUGUCAUUUCUUUAGGCCAAUA - 86
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45