miRBase entry: mml-mir-19b-1

Stem-loop mml-mir-19b-1


Accession
MI0003005
Description
Macaca mulatta mml-mir-19b-1 precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
3 open access papers mention mml-mir-19b-1
(4 sentences)

Sequence

3878 reads, 49 reads per million, 9 experiments
cacuguucuaugguuaguuuugcagguuugcauccagcugugugauauucugcUGUGCAAAUCCAUGCAAAACUGAcugugguagug
(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))

Structure
     uu                 -  -      uc    ugugu 
cacug  cuaugguuaguuuugca gg uuugca  cagc     g
|||||  ||||||||||||||||| || ||||||  ||||     a
gugau  ggugucAGUCAAAACGU CC AAACGU  GUcg     u
     --                 A  U      --    ucuua 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr17: 73096694-73096780 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mml-mir-19b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-19b

Accession MIMAT0002705
Description Macaca mulatta mml-miR-19b mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24