miRBase entry: mml-mir-19a

Stem-loop mml-mir-19a


Accession
MI0003003
Description
Macaca mulatta mml-mir-19a precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
3 open access papers mention mml-mir-19a
(4 sentences)

Sequence

1302 reads, 19 reads per million, 9 experiments
gcaguccucuguuAGUUUUGCAUAGUUGCACUACaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure
    u  u                 --      ---    ag 
gcag cc cuguuAGUUUUGCAUAG  UUGCAC   UACa  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr17: 73096393-73096474 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mml-mir-19a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-19a-3p

Accession MIMAT0002703
Description Macaca mulatta mml-miR-19a-3p mature miRNA
Sequence 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
Evidence experimental
Illumina [2]

Mature mml-miR-19a-5p

Accession MIMAT0026596
Description Macaca mulatta mml-miR-19a-5p mature miRNA
Sequence 14 - AGUUUUGCAUAGUUGCACUAC - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45