miRBase entry: mml-mir-17

Stem-loop mml-mir-17


Accession
MI0003001
Description
Macaca mulatta mml-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
4 open access papers mention mml-mir-17
(6 sentences)

Sequence

27155 reads, 339 reads per million, 9 experiments
gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauaugugcaucuACUGCAGUGAAGGCACUUGUagcauuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure
    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  a
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuacg   UUCACGGA GU ACGUC Auc ac  g
    gg       aUG        A  G     -   u  gu 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [2]. The expression of this mature miRNA was validated by Miska et al [1].

Genome context
chr17: 73096107-73096190 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mml-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-17-5p

Accession MIMAT0002700
Description Macaca mulatta mml-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence experimental
cloned [1]

Mature mml-miR-17-3p

Accession MIMAT0002701
Description Macaca mulatta mml-miR-17-3p mature miRNA
Sequence 51 - ACUGCAGUGAAGGCACUUGU - 70
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68

  2. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24