miRBase entry: lca-mir-16

Stem-loop lca-mir-16


Accession
MI0002956
Description
Lemur catta lca-mir-16 precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGUGuuaagauucuaaaauuaucucuaaguauuaacugugccg
..................((((((.((((((((.(.(((..........))).).)).)))))).)).))))..

Structure
gucagcagugccuUAGCA    -  A      -  U u   gauu 
                  GCAC GU AAUAUU GG G uaa    c
                  |||| || |||||| || | |||     
                  cgug ca uuauga uc c auu    u
----------------gc    u  a      a  u u   aaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Unknown

Database links

Mature lca-miR-16

Accession MIMAT0002649
Description Lemur catta lca-miR-16 mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGUG - 35
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24