Stem-loop ppa-mir-1

Accession

MI0002930

Description

Pan paniscus ppa-mir-1 precursor miRNA

Gene family

MIPF0000038; mir-1

Sequence

accuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAuuuuugguaggc
.((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).)))))).

Structure

a      c                     ac     ug aca 
 ccuacu agaguacauacuucuuuaugu  ccaua  a   u
 |||||| |||||||||||||||||||||  |||||  |    
 ggaugg uuuuAUGUAUGAAGAAAUGUA  GGUau  u   a
c      u                     -A     cg aac 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr18: 18704313-18704397 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-1

Mature ppa-miR-1

• Accession: MIMAT0002621
• Description: Pan paniscus ppa-miR-1 mature miRNA
• Sequence: 53 - UGGAAUGUAAAGAAGUAUGUA - 73
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24