Stem-loop sequence ptr-mir-30c-2

Accession

MI0002923 (change log)

Previous IDs

ptr-mir-30c

Description

Pan troglodytes miR-30c-2 stem-loop

Gene family

MIPF0000005; mir-30

Literature search

2 open access papers mention ptr-mir-30c-2
(2 sentences)

Stem-loop

      uacu       u   aca         guggaa 
5' aga    guaaaca ccu   cucucagcu      a
   |||    ||||||| |||   |||||||||       
3' ucu    cauuugu gga   gagggucga      g
      uucu       c   --a         aagaau 

Confidence

Annotation confidence: not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

• Coordinates (Pan_tro3.0; GCA_000001515.5): chr6: 74025074-74025145 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR30C-2
• miRBase Tracker:MI0002923

Mature sequence ptr-miR-30c

• Accession: MIMAT0002614
• Sequence: 7 - uguaaacauccuacacucucagc - 29
• Evidence: by similarity; MI0000736
• Predicted targets:
  • TargetScanVert:ptr-miR-30c

References

1. PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).