Stem-loop ppy-mir-197

Accession

MI0002910

Description

Pongo pygmaeus ppy-mir-197 precursor miRNA

Gene family

MIPF0000123; mir-197

Sequence

ggcugugccggguagagagggcagugggagguaagagcucuucacccUUCACCACCUUCUCCACCCAGCauggcc
((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))

Structure

        c    a       ca     a   -   a 
ggcugugc gggu gagaggg  guggg ggu aag g
|||||||| |||| |||||||  ||||| ||| |||  
ccgguaCG CCCA CUCUUCC  CACUU cca uuc c
        A    C       AC     c   c   u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 118669818-118669892 [-]

Mature ppy-miR-197

• Accession: MIMAT0002601
• Description: Pongo pygmaeus ppy-miR-197 mature miRNA
• Sequence: 48 - UUCACCACCUUCUCCACCCAGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24