miRBase entry: ptr-mir-223

Stem-loop ptr-mir-223


Accession
MI0002898
Description
Pan troglodytes ptr-mir-223 precursor miRNA
Gene family
MIPF0000067; mir-223


Sequence

ccuggccuccugcagugccacgcuccguguauuugacaagcugaguuggacacuccaugugguagagUGUCAGUUUGUCAAAUACCCCaagugcggcacaugcuuaccag
.((((......((((((((.((((..(.((((((((((((((......(((((((.........))))))))))))))))))))).)..)))).))))).)))...))))

Structure
c    ccuccu   -     a    cc u              gaguug       cau 
 cugg      gca gugcc cgcu  g guauuugacaagcu      gacacuc   g
 ||||      ||| ||||| ||||  | ||||||||||||||      |||||||   u
 gacc      cgu cacgg guga  C CAUAAACUGUUUGA      CUGUgag   g
-    ---auu   a     c    aC C              ------       aug 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 65052616-65052725 [+]

Database links

Mature ptr-miR-223

Accession MIMAT0002589
Description Pan troglodytes ptr-miR-223 mature miRNA
Sequence 68 - UGUCAGUUUGUCAAAUACCCC - 88
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24