miRBase entry: ppa-mir-218-1

Stem-loop ppa-mir-218-1


Accession
MI0002870
Description
Pan paniscus ppa-mir-218-1 precursor miRNA
Gene family
MIPF0000026; mir-218


Sequence

gugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcgagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuaca
(((..((.((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).))))..))).

Structure
-   au  u  a   a   u      U         CU        gg    gag 
 gug  aa gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 |||  || || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 cau  uu cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
a   cu  -  a   a   c      c         cc        -a    agu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr4: 20222397-20222506 [+]

Database links

Mature ppa-miR-218

Accession MIMAT0002567
Description Pan paniscus ppa-miR-218 mature miRNA
Sequence 25 - UUGUGCUUGAUCUAACCAUGU - 45
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24