miRBase entry: lca-mir-216

Stem-loop lca-mir-216


Accession
MI0002861
Description
Lemur catta lca-mir-216 precursor miRNA
Gene family
MIPF0000054; mir-216


Sequence

gauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGagauguucauacaaucccucacaguggucucugggauuaugcuaaacagagcaauuuccuagcccucacga
((.(((((.((((((((.(((((((((..(((.((((((((.(((....)))....)))))))).))).))))))))).)))))..........))).))))).))....

Structure
----  u     u   ----------     u         CU   A        ---a   u 
    ga ggcug gag          uuggc UAAUCUCAG  GGC ACUGUGag    ugu c
    || ||||| |||          ||||| |||||||||  ||| ||||||||    |||  
    cu ccgau cuu          aaucg auuaggguc  cug ugacacuc    aca a
agca  c     c   uaacgagaca     u         -u   g        ccua   u 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Unknown

Database links

Mature lca-miR-216

Accession MIMAT0002558
Description Lemur catta lca-miR-216 mature miRNA
Sequence 19 - UAAUCUCAGCUGGCAACUGUG - 39
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24