miRBase entry: mml-mir-214

Stem-loop mml-mir-214


Accession
MI0002858
Description
Macaca mulatta mml-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
1 open access papers mention mml-mir-214
(1 sentences)

Sequence

1631 reads, 30 reads per million, 9 experiments
ggccuggcuggacagaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure
ggccu      acaga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 195417710-195417819 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-214-3p

Accession MIMAT0002555
Description Macaca mulatta mml-miR-214-3p mature miRNA
Sequence 71 - ACAGCAGGCACAGACAGGCAG - 91
Evidence experimental
Illumina [2]

Mature mml-miR-214-5p

Accession MIMAT0026588
Description Macaca mulatta mml-miR-214-5p mature miRNA
Sequence 30 - UGCCUGUCUACACUUGCUGUGC - 51
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45