miRBase entry: ggo-mir-199a

Stem-loop ggo-mir-199a


Accession
MI0002830
Description
Gorilla gorilla ggo-mir-199a precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure
aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca gu  cc  a
----a   -  -----    a    u   auu       c        -   u  ug  gu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 151190886-151190995 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-199a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-199a

Accession MIMAT0002527
Description Gorilla gorilla ggo-miR-199a mature miRNA
Sequence 31 - CCCAGUGUUCAGACUACCUGUUC - 53
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24