Stem-loop lla-mir-196

Accession

MI0002827

Description

Lagothrix lagotricha lla-mir-196 precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

ugcuugcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacucggcaacaagaaacugccugaguuacaucagucgguuuucgucgagggc
..(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).))))...

Structure

-ug    - -uc       --c                  A          a  gag 
   cuug c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
   |||| |   |||||||   |||||||||||||||||| |||||||||| ||    
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc aa   u
cgg    u cuu       acu                  a          -  guu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

Unknown

Mature lla-miR-196

• Accession: MIMAT0002524
• Description: Lagothrix lagotricha lla-miR-196 mature miRNA
• Sequence: 25 - UAGGUAGUUUCAUGUUGUUGGG - 46
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24