miRBase entry: ggo-mir-196-2

Stem-loop ggo-mir-196-2


Accession
MI0002825
Description
Gorilla gorilla ggo-mir-196-2 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ugcucgcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGgauugaguuuugaacucggcaacaagaaacugccugaguuacaucagucgguuuucgucgagggc
..(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).))))...

Structure
-ug    - -uc       --c                  A          a  gag 
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGg uu   u
   |||| |   |||||||   |||||||||||||||||| |||||||||| ||    
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc aa   u
cgg    u cuu       acu                  a          -  guu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr12: 32177915-32178024 [-]

Database links

Mature ggo-miR-196

Accession MIMAT0002520
Description Gorilla gorilla ggo-miR-196 mature miRNA
Sequence 25 - UAGGUAGUUUCAUGUUGUUGG - 45
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24