miRBase entry: ppy-mir-196-1

Stem-loop ppy-mir-196-1


Accession
MI0002823
Description
Pongo pygmaeus ppy-mir-196-1 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

gugaauUAGGUAGUUUCAUGUUGUUGGgccuggguuucugaacacaacaacauuaaaccacccgauucac
(((((((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)))))))

Structure
       A   A    C         - gc ugg 
gugaauU GGU GUUU AUGUUGUUG G  c   g
||||||| ||| |||| ||||||||| |  |   u
cacuuag cca caaa uacaacaac c  g   u
       c   c    u         a aa ucu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
NW_002963091.1: 1600269-1600338 [-]

Database links

Mature ppy-miR-196

Accession MIMAT0002521
Description Pongo pygmaeus ppy-miR-196 mature miRNA
Sequence 7 - UAGGUAGUUUCAUGUUGUUGG - 27
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24