miRBase entry: ppy-mir-182

Stem-loop ppy-mir-182

Accession

MI0002816

Description

Pongo pygmaeus ppy-mir-182 precursor miRNA

Gene family

MIPF0000116; mir-182

Sequence

cacagcugcuugccuucccccguuUUUGGCAAUGGUAGAACUCACAcuggugagguaacaggauccggugguucuagacuugccaacuauggggcgaggacucagccggcac
....((((((.(((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).)))).)..)).))))..

Structure

caca    -  -u -    c      uU       UGG      UCA      ugaggu 
    gcug cu  g ccuu ccccgu  UUGGCAA   UAGAAC   CAcugg      a
    |||| ||  | |||| ||||||  |||||||   ||||||   ||||||       
    cggc ga  c ggag ggggua  aaccguu   aucuug   guggcc      a
--ca    c  cu a    c      uc       cag      ---      uaggac

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr7: 126686148-126686259 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppy-mir-182

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-182

Accession	MIMAT0002514
Description	Pongo pygmaeus ppy-miR-182 mature miRNA
Sequence	25 - UUUGGCAAUGGUAGAACUCACA - 46
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24