miRBase entry: mml-mir-182

Stem-loop mml-mir-182


Accession
MI0002815
Description
Macaca mulatta mml-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182

Literature search
1 open access papers mention mml-mir-182
(2 sentences)

Sequence

61044 reads, 477 reads per million, 9 experiments
cacagcugcuugccucccccuguuUUUGGCAAUGGUAGAACUCACAcuggugagguaaugggauccggugguucuagacuugccaacuacggggcgagggcucagccggcac
....((((((.((((.(((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).).))))..)).))))..

Structure
caca    -  -u    c -      uU       UGG      UCA      ugaggu 
    gcug cu  gccu c cccugu  UUGGCAA   UAGAAC   CAcugg      a
    |||| ||  |||| | ||||||  |||||||   ||||||   ||||||       
    cggc ga  cggg g ggggca  aaccguu   aucuug   guggcc      a
--ca    c  cu    a c      uc       cag      ---      uagggu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 155854815-155854926 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mml-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-182

Accession MIMAT0002513
Description Macaca mulatta mml-miR-182 mature miRNA
Sequence 25 - UUUGGCAAUGGUAGAACUCACA - 46
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24