miRBase entry: ppa-mir-34a

Stem-loop ppa-mir-34a


Accession
MI0002798
Description
Pan paniscus ppa-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

ggccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUugugagcaauaguaaggaagcaaucagcaaguauacugcccuagaagugcugcacguuguggggccc
((((.(((((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..))..)))).

Structure
-    -a  --    -         uU        -   A          -guga  a 
 ggcc  gc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUu     gc a
 ||||  ||  |||| |||||||||  |||||||| ||| ||||||||||     ||  
 ccgg  ug  gcac ucgugaaga  ccgucaua gaa cgacuaacga     ug u
c    gg  uu    g         uc        u   -          aggaa  a 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 9141308-9141417 [-]

Database links

Mature ppa-miR-34a

Accession MIMAT0002496
Description Pan paniscus ppa-miR-34a mature miRNA
Sequence 22 - UGGCAGUGUCUUAGCUGGUUGU - 43
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24