miRBase entry: ppy-mir-7-2

Stem-loop ppy-mir-7-2


Accession
MI0002782
Description
Pongo pygmaeus ppy-mir-7-2 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

cuggauacagaguggaccggcuggccccgucUGGAAGACUAGUGAUUUUGUUguugucuuacugcgcucaacaacaaaucccagucugccuaauggugccagccaucgca
(((....))).((((...(((((((.((((..((.(((((.(.(((((.(((((((............))))))))))))).))))).))..)))).))))))).)))).

Structure
cuggauacaga    acc       c    cU  A     A U     U       ucuua 
           gugg   ggcuggc ccgu  GG AGACU G GAUUU GUUguug     c
           ||||   ||||||| ||||  || ||||| | ||||| |||||||      
           cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
----------a    --a       u    au  g     c -     -       ucgcg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr15: 85252446-85252555 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-7-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-7

Accession MIMAT0002480
Description Pongo pygmaeus ppy-miR-7 mature miRNA
Sequence 32 - UGGAAGACUAGUGAUUUUGUU - 52
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24