Stem-loop ppy-mir-147a

Accession

MI0002771

Description

Pongo pygmaeus ppy-mir-147a precursor miRNA

Gene family

MIPF0000105; mir-147

Sequence

aaucuaaagaaaacauuucugcacacacaccagacuauggaagccaGUGUGUGGAAAUGCUUCUGCuagauu
((((((.((((..(((((((((((((...(((.....)))......))))))))))))).))))..))))))

Structure

      -a    aa             ---aca   g 
aaucua  agaa  cauuucugcacac      cca a
||||||  ||||  |||||||||||||      ||| c
uuagau  UCUU  GUAAAGGUGUGUG      ggu u
      CG    -C             accgaa   a 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 117043215-117043286 [-]

Mature ppy-miR-147a

• Accession: MIMAT0002475
• Description: Pongo pygmaeus ppy-miR-147a mature miRNA
• Sequence: 47 - GUGUGUGGAAAUGCUUCUGC - 66
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24