Stem-loop ppy-mir-124a

Accession

MI0002764

Description

Pongo pygmaeus ppy-mir-124a precursor miRNA

Gene family

MIPF0000021; mir-124

Sequence

aucaagauuagaggcucugcccuccguguucacagcggaccuugauuuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagagcggagccuacggcugcacuugaa
.(((((..((((((((((((.((..((((((((.(((..((((((((...........))))))))..))).))))))))..)).)))))))))....)))..))))).

Structure

a     au   ----         c  cc        a   ga        uaau 
 ucaag  uag    aggcucugc cu  guguucac gcg  ccuugauu    g
 |||||  |||    ||||||||| ||  |||||||| |||  ||||||||    u
 aguuc  guc    uccgaggcg ga  CGUAAGUG CGC  GGAAUUaa    c
a     ac   ggca         a  AC        G   AC        caua 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 66583100-66583208 [+]

Mature ppy-miR-124a

• Accession: MIMAT0002468
• Description: Pongo pygmaeus ppy-miR-124a mature miRNA
• Sequence: 61 - UUAAGGCACGCGGUGAAUGCCA - 82
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24