miRBase entry: ppy-mir-100

Stem-loop ppy-mir-100

Accession

MI0002712

Description

Pongo pygmaeus ppy-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ccuguugccacaAACCCGUAGAUCCGAACUUGUGguauuaguccgcacaagcuuguaucuacagguaugugucuguuagg
((((....((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).....))))

Structure

    -uugc    A   C      C   A      guau 
ccug     caca ACC GUAGAU CGA CUUGUG    u
||||     |||| ||| |||||| ||| ||||||    a
ggau     gugu ugg caucua guu gaacac    g
    ugucu    a   a      u   c      gccu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr11: 119108173-119108252 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-100

Accession	MIMAT0002420
Description	Pongo pygmaeus ppy-miR-100 mature miRNA
Sequence	13 - AACCCGUAGAUCCGAACUUGUG - 34
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24