Stem-loop ppy-mir-33a

Accession

MI0002687

Description

Pongo pygmaeus ppy-mir-33a precursor miRNA

Gene family

MIPF0000070; mir-33

Sequence

cugcgGUGCAUUGUAGUUGCAUUGcauguucuggugguacccaugcaauguuuccacagugcaucacag
(((.((((((((((.(..((((((((((....(((...)))))))))))))..).)))))))))).)))

Structure

   c          A UU          uucu   g 
cug gGUGCAUUGU G  GCAUUGcaug    ggu  
||| |||||||||| |  ||||||||||    ||| g
gac cuacgugaca c  uguaacguac    cca  
   a          c uu          ----   u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr22: 37169637-37169705 [+]

Mature ppy-miR-33a

• Accession: MIMAT0002395
• Description: Pongo pygmaeus ppy-miR-33a mature miRNA
• Sequence: 6 - GUGCAUUGUAGUUGCAUUG - 24
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24