miRBase entry: mml-mir-29a

Stem-loop mml-mir-29a


Accession
MI0002662
Description
Macaca mulatta mml-mir-29a precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
6 open access papers mention mml-mir-29a
(7 sentences)

Sequence

611962 reads, 3912 reads per million, 9 experiments
augaCUGAUUUCUUUUGGUGUUCAGAgucaauauaauuuuCUAGCACCAUCUGAAAUCGGUUau
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure
            UUU       C    ucaa 
augaCUGAUUUC   UGGUGUU AGAg    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 157003023-157003086 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-29a-3p

Accession MIMAT0002365
Description Macaca mulatta mml-miR-29a-3p mature miRNA
Sequence 41 - CUAGCACCAUCUGAAAUCGGUU - 62
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-29a-5p

Accession MIMAT0026576
Description Macaca mulatta mml-miR-29a-5p mature miRNA
Sequence 5 - CUGAUUUCUUUUGGUGUUCAGA - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45