Stem-loop ppy-mir-188

Accession

MI0002610

Description

Pongo pygmaeus ppy-mir-188 precursor miRNA

Gene family

MIPF0000113; mir-188

Sequence

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuucugaaaaccccucccacaugcaggguuugcaggauggcgagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g c
c    c  -u   ac  uu         ac      caaaa u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 50536260-50536345 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppy-mir-188

Mature ppy-miR-188

• Accession: MIMAT0002309
• Description: Pongo pygmaeus ppy-miR-188 mature miRNA
• Sequence: 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24