miRBase entry: ppa-mir-134

Stem-loop ppa-mir-134


Accession
MI0002592
Description
Pan paniscus ppa-mir-134 precursor miRNA
Gene family
MIPF0000112; mir-134


Sequence

cagggugUGUGACUGGUUGACCAGAGGGgcaugcacuguguucacccugugggccaccuagucaccaacccuc
.(((((..((((((((.((.(((.((((((((.....))))...)))).)))..)).))))))))..))))).

Structure
c     gU        U  -A   G    ---    g 
 agggu  GUGACUGG UG  CCA AGGG   gcau c
 |||||  |||||||| ||  ||| ||||   |||| a
 uccca  cacugauc ac  ggu uccc   ugug c
c     ac        c  cg   g    acu    u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr14: 100988947-100989019 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ppa-mir-134
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-134

Accession MIMAT0002291
Description Pan paniscus ppa-miR-134 mature miRNA
Sequence 8 - UGUGACUGGUUGACCAGAGGG - 28
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24