Stem-loop ppy-mir-144

Accession

MI0002555

Description

Pongo pygmaeus ppy-mir-144 precursor miRNA

Gene family

MIPF0000093; mir-144

Sequence

uggggcccuggcugggauaucaucauauacuguaaguuugcgaugagacacUACAGUAUAGAUGAUGUACUAGucugggcaccccc
.(((((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)))..

Structure

-u   -    u      g        a         -a    gc 
  ggg gccc ggcugg auaucauc uauacugua  guuu  g
  ||| |||| |||||| |||||||| |||||||||  ||||   
  ccc cggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cc   a    u      A        -         ca    gu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr17: 23605784-23605869 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-144

Mature ppy-miR-144

• Accession: MIMAT0002263
• Description: Pongo pygmaeus ppy-miR-144 mature miRNA
• Sequence: 52 - UACAGUAUAGAUGAUGUACUAG - 73
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24