Stem-loop ppa-mir-125b

Accession

MI0002511

Description

Pan paniscus ppa-mir-125b precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ugcgcuccucucagUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagucgu
.(((...(((.((((.(((((((.(((((((((((..(((((.....))))).))))))))))).))))))).)))).))).)))

Structure

u   cuc   u    C       C           Au     c 
 gcg   cuc cagU CCUGAGA CCUAACUUGUG  guuua c
 |||   ||| |||| ||||||| |||||||||||  ||||| g
 ugc   gag gucg ggguucu ggauugggcac  uaaau u
-   --u   c    a       c           -c     u 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr11: 120859655-120859739 [-]

Mature ppa-miR-125b

• Accession: MIMAT0002222
• Description: Pan paniscus ppa-miR-125b mature miRNA
• Sequence: 15 - UCCCUGAGACCCUAACUUGUGA - 36
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24