miRBase entry: ggo-mir-30b

Stem-loop ggo-mir-30b

Accession

MI0002504

Description

Gorilla gorilla ggo-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

accaaguuccaguucaUGUAAACAUCCUACACUCAGCuguaauacauggauuggcugggagguggauguuuacuucagcugacuugga
.((((((..(((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).

Structure

a      uc     caU          U  -A        uaaua 
 ccaagu  caguu   GUAAACAUCC AC  CUCAGCug     c
 ||||||  |||||   |||||||||| ||  ||||||||      
 gguuca  gucga   cauuuguagg ug  gggucggu     a
a      --     cuu          -  ga        uaggu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr8: 136256612-136256699 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-30b

Accession	MIMAT0002215
Description	Gorilla gorilla ggo-miR-30b mature miRNA
Sequence	17 - UGUAAACAUCCUACACUCAGC - 37
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24