miRBase entry: ptr-mir-30b

Stem-loop ptr-mir-30b


Accession
MI0002503
Description
Pan troglodytes ptr-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention ptr-mir-30b
(1 sentences)

Sequence

accaaguuucaguucaUGUAAACAUCCUACACUCAGCuguaauacauggauuggcugggagguggauguuuacuucagcugacuugga
.(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...))))))))))).

Structure
a     uu      caU          U  -A        uaaua 
 ccaag  ucaguu   GUAAACAUCC AC  CUCAGCug     c
 |||||  ||||||   |||||||||| ||  ||||||||      
 gguuc  agucga   cauuuguagg ug  gggucggu     a
a     --      cuu          -  ga        uaggu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr8: 137272665-137272752 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-30b

Accession MIMAT0002214
Description Pan troglodytes ptr-miR-30b mature miRNA
Sequence 17 - UGUAAACAUCCUACACUCAGC - 37
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24