miRBase entry: ggo-mir-200c

Stem-loop ggo-mir-200c


Accession
MI0002486
Description
Gorilla gorilla ggo-mir-200c precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

ccucgucuuacccagcaguguuugggugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure
    -   -      a        u   u  ggu 
ccuc guc uuaccc gcaguguu ggg gc   u
|||| ||| |||||| |||||||| ||| ||    
ggAG UAG AAUGGG CGUCAUAA cuc ug   g
    G   U      C        u   -  agg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr12: 7040141-7040207 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ggo-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ggo-miR-200c

Accession MIMAT0002197
Description Gorilla gorilla ggo-miR-200c mature miRNA
Sequence 44 - AAUACUGCCGGGUAAUGAUGGA - 65
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24