miRBase entry: ssc-let-7i

Stem-loop ssc-let-7i


Accession
MI0002447
Description
Sus scrofa ssc-let-7i precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
42 open access papers mention ssc-let-7i
(130 sentences)

Sequence

3429 reads, 995 reads per million, 15 experiments
cuggcUGAGGUAGUAGUUUGUGCUguuggucggguugugacauugcccgcuguggagauaaCUGCGCAAGCUACUGCCUUGCUag
(((((.(((((((((((((((((.(((((.(((((.........)))))))........))).))))))))))))))))))))))

Structure
     U                 U   --------  u     ugu 
cuggc GAGGUAGUAGUUUGUGC guu        gg cgggu   g
||||| ||||||||||||||||| |||        || |||||   a
gaUCG UUCCGUCAUCGAACGCG Caa        uc gcccg   c
     -                 U   uagaggug  -     uua 


Annotation confidence Not enough data
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Genome context
chr5: 30021224-30021308 [+]

Database links

Mature ssc-let-7i-5p

Accession MIMAT0002153
Description Sus scrofa ssc-let-7i-5p mature miRNA
Sequence 6 - UGAGGUAGUAGUUUGUGCU - 24
Evidence experimental
cloned [2], Illumina [3-4]

Mature ssc-let-7i-3p

Accession MIMAT0037319
Description Sus scrofa ssc-let-7i-3p mature miRNA
Sequence 62 - CUGCGCAAGCUACUGCCUUGCU - 83
Evidence experimental
Illumina [5]

References

  1. PubMed ID: 15885146
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
    "BMC Genomics (2005) 6:70

  2. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  3. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328

  4. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100

  5. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252