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miRBase |
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Stem-loop sequence ssc-mir-27a |
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Accession | MI0002442 (change log) | |||||||
Description | Sus scrofa miR-27a stem-loop | |||||||
Gene family | MIPF0000036; mir-27 | |||||||
Literature search |
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25 open access papers mention ssc-mir-27a | |||||||
Stem-loop |
ugg u a a ug u g u cac 5' cc gggg gc gggcuuagc cu gugagca g c a || |||| || ||||||||| || ||||||| | | 3' gg cccc cg cuugaaucg ga cacuugu c g g --a u - c gu - g u aac |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-27a |
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Accession | MIMAT0002148 |
Sequence |
54 - uucacaguggcuaaguuccgc - 74 |
Deep sequencing | 79047 reads, 15 experiments |
Evidence | experimental; cloned [2], Illumina [3-4] |
References |
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1 |
PMID:15885146
"Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing"
BMC Genomics. 6:70(2005).
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2 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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