Stem-loop sequence ath-MIR447c

Accession

MI0002409 (change log)

Description

Arabidopsis thaliana miR447c stem-loop

Gene family

MIPF0000170; MIR447

Literature search

3 open access papers mention ath-MIR447c
(19 sentences)

Stem-loop

          a     c      u uu    a g   u  g      aca         a       c    -    g u        cu  g  cuu     u 
5' cauucuu auaua aauacu c  uuuc u cau aa ccccuu   augucgagu aacaaag augu gucc c aauauugu  uc ag   gguau u
   ||||||| ||||| |||||| |  |||| | ||| || ||||||   ||||||||| ||||||| |||| |||| | ||||||||  || ||   |||||  
3' guaagaa uauau uuauga g  aaag a gug uu ggggaa   uauagcuca uuguuuu uaca cagg g uuauggca  ag uc   uuaug u
          c     a      u uu    a g   u  g      gaa         g       c    g    g u        -u  -  ---     u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 1523306-1523503 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR447c

• ath-MIR447a: chr4: 1528134-1528370 [-]
• ath-MIR447c: chr4: 1523306-1523503 [-]

Database links

• RNAcentral:URS00004C23A4_3702
• miRBase Tracker:MI0002409

Mature sequence ath-miR447c-5p

• Accession: MIMAT0020346
• Sequence: 39 - ccccuuacaaugucgaguaaa - 59
• Evidence: experimental; Illumina [4]

Mature sequence ath-miR447c-3p

• Accession: MIMAT0002115
• Previous IDs: ath-miR447c
• Sequence: 121 - uuggggacgacaucuuuuguug - 142
• Evidence: experimental; cloned [1], 5'RACE [2], 454 [3]

References

1. PMID:15851028 "microRNA-directed phasing during trans-acting siRNA biogenesis in plants" Allen E, Xie Z, Gustafson AM, Carrington JC Cell. 121:207-221(2005).
2. PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
3. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
4. PMID:21357774 "MicroRNA activity in the Arabidopsis male germline" Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD J Exp Bot. 62:1611-1620(2011).