Stem-loop sequence ath-MIR447b

Accession

MI0002408 (change log)

Description

Arabidopsis thaliana miR447b stem-loop

Gene family

MIPF0000170; MIR447

Literature search

3 open access papers mention ath-MIR447b
(17 sentences)

Stem-loop

                c        uu    a     u  u      aca         a            -      ug   --u    uucgagcuugguguguuuuucuagccagcc 
5' cauucuuaauaua aauacuac  uuuc uccau aa ccccuu   augucgagu aacgaagcaucu gucccc  gua   uguc                              c
   ||||||||||||| ||||||||  |||| ||||| || ||||||   ||||||||| |||||||||||| ||||||  |||   ||||                              c
3' guaagaguuauau uuaugaug  aaag aggua uu ggggaa   uauagcuca uuguuuuguaga cagggg  uau   acag                              a
                a        uu    a     u  c      gaa         g            g      uu   uac    ucuuauguuuguuacuaguugagcucuuga 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 1535426-1535661 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ath-MIR447b

• ath-MIR447b: chr4: 1535426-1535661 [-]
• ath-MIR447a: chr4: 1528134-1528370 [-]

Database links

• RNAcentral:URS000009DA24_3702
• miRBase Tracker:MI0002408

Mature sequence ath-miR447b

• Accession: MIMAT0002114
• Sequence: 159 - uuggggacgagauguuuuguug - 180
• Evidence: experimental; cloned [1-2], 5'RACE [2], 454 [3], Illumina [4]

References

1. PMID:15851028 "microRNA-directed phasing during trans-acting siRNA biogenesis in plants" Allen E, Xie Z, Gustafson AM, Carrington JC Cell. 121:207-221(2005).
2. PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
3. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
4. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).